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The Gut Health & Down Syndrome Connection

Expert reviewed by Lauren Mahesri, RDN | Published June 30, 2025

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Down syndrome is a genetic condition that happens when a baby is born with an extra copy of chromosome 21. As the most common chromosomal condition in the U.S., seen in about 1 in every 700 births, it can affect a kid’s growth, learning, and development (1). 

As we learn more about how gut health affects mood, immunity, and even brain function, it’s clear that kids with unique health and developmental challenges like those with Down syndrome may benefit from extra gut support.

In this post, we’ll look at how gut health affects kiddos with Down syndrome and practical ways to support their gut. 

The Importance of Gut Health in Development

The gut is home to trillions of bacteria called the microbiome that help with digestion, absorbing nutrients, supporting the immune system, and even developing the brain. 

The gut and brain are constantly “talking” to each other through nerves, hormones, and the immune system in a pathway called the gut-brain connection (2). For kids with Down syndrome, taking care of gut health might help this pathway and ultimately improve areas like immunity, focus, and mood. 

While gut issues aren’t the cause of Down syndrome, they can add extra strain to your kiddo’s body. When digestion is off track, it may make everyday challenges like eating, sleeping, or managing emotions even more difficult.

Common Gut Health Challenges in Down Syndrome

Around half of kids with Down syndrome deal with gut-related problems (3). These can look different for every child, but the most common include:

  • Constipation 

  • Frequent infections (giardia)

  • Reflux (GERD)

  • Structural issues in the digestive tract

  • Celiac disease

These gut challenges can amplify challenges that kids with Down syndrome already struggle with like feeding challenges, sensory issues with food, low appetite, poor sleeping patterns, sleep disorders, and anxiety (5).

How Gut Health & Down Syndrome Impact Each Other

Research shows that the gut bacteria in kids with Down syndrome is different from kids without it (1). That tells us there’s a connection worth paying attention to.

For example, kids with Down syndrome often have more of the bacteria that make short-chain fatty acids (SCFAs). These SCFAs help calm inflammation and support the immune system. Since kids with Down syndrome tend to have more inflammation, this is especially helpful.

Those helpful gut bacteria rely on fiber to function well. Making sure your kiddo gets enough fiber in their diet can go a long way in supporting a healthier, more balanced gut.

Research has also found other gut bacteria differences in Down syndrome, like higher levels ofSutterella bacterial strains and lower levels ofVeillonellaceae, which may be linked to both brain inflammation and digestion issues (1).These GI symptomsmay mask or mimic behavior changes in kiddos with Down syndrome.

One study even found that when kids with Down syndrome also had digestive issues like IBS or constipation their quality of life was noticeably lower (5). Helping their gut feel better may improve their mood, sleep, and overall well being.

How to Support Gut Health

Diet, lifestyle, stress, hydration, medications, and even sleep can play a role in managing gut health, but here are some actionable steps to improve your little one’s gut microbiome.

1. Add More Variety

Although many kids with Down syndrome struggle with sensory issues or picky eating, prioritizing eating a variety of foods is key. The more types of foods eaten means more variety of gut bacteria leading to a stronger and more resilient gut microbiome. 

2. Focus on Fiber

Foods with fiber can help soften stools and prevent constipation, one of the most common gastrointestinal issues associated with Down syndrome. Plus, fiber creates more short chain fatty acids, which has been shown to be beneficial for kids with Down syndrome to balance their immune system and prevent chronic inflammation. 

3. Include Prebiotics and Probiotics

Prebiotics are the fuel for good gut bacteria that can be found in fiber-rich foods. Probiotics are the good gut bacteria that help balance out the microbiome. Adding more of these gut-friendly nutrients to your kiddo’s diet can help support a healthier, more balanced digestive system.

4. Stick to a Routine

Keeping consistent meal times, wake-up times, and bedtimes helps support a healthy circadian rhythm, which also benefits the microbiome and digestion (6). Plus, many kids with Down syndrome tend to do well with structure, so this habit can support both gut health and daily routines.

Summary

If your kiddo has Down syndrome, their gut health can have a big impact on how they feel every day. Because constipation, reflux, and other digestive issues are common, they can affect things like mood, behavior, and overall well-being.

Incorporating more fiber-rich foods, introducing prebiotics and probiotics, and sticking to a regular daily routine can go a long way in helping your kiddo feel their best from the inside out.

View Citation

  1. Biagi, E., Candela, M., Centanni, M., Consolandi, C., Rampelli, S., Turroni, S., Severgnini, M., Peano, C., Ghezzo, A., Scurti, M., Salvioli, S., Franceschi, C., & Brigidi, P. (2014). Gut microbiome in Down syndrome. PloS one, 9(11), e112023. https://doi.org/10.1371/journal.pone.0112023 
  2. O'Riordan, K. J., Moloney, G. M., Keane, L., Clarke, G., & Cryan, J. F. (2025). The gut microbiota-immune-brain axis: Therapeutic implications. Cell reports. Medicine, 6(3), 101982. https://doi.org/10.1016/j.xcrm.2025.101982 
  3. Bermudez, B. E. B. V., de Oliveira, C. M., de Lima Cat, M. N., Magdalena, N. I. R., & Celli, A. (2019). Gastrointestinal disorders in Down syndrome. American journal of medical genetics. Part A, 179(8), 1426–1431. https://doi.org/10.1002/ajmg.a.61258 
  4. Akhtar F, Bokhari SRA. Down Syndrome. [Updated 2023 Aug 8]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK526016/ 
  5. Down syndrome with disorders of gut-brain interaction. American journal of medical genetics. Part C, Seminars in medical genetics, 193(4), e32071. https://doi.org/10.1002/ajmg.c.32071  
  6. Voigt, R. M., Forsyth, C. B., & Keshavarzian, A. (2019). Circadian rhythms: a regulator of gastrointestinal health and dysfunction. Expert review of gastroenterology & hepatology, 13(5), 411–424. https://doi.org/10.1080/17474124.2019.1595588