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How Does Gluten Impact My Kid’s Digestion?

Medically Reviewed by May Zhu, RDN | Published June 30, 2025

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If you’ve ever wondered whether gluten is behind your kid’s tummy troubles, you are not alone. While gluten is perfectly well-tolerated by many kids, for others it can contribute to bloating, gas, tummy aches, or irregular pooping. 

Understandinghow gluten impacts digestion in kids can help parents figure out whether it is something worth exploring, or not.

What Is Gluten?

Gluten is a protein found in wheat, barley, and rye. It helps give bread its chewy texture and acts as a binder in many baked goods, pastas, cereals, and snacks.

For most kids, gluten does not cause problems. But for some, it can be difficult to digest or trigger digestive symptoms.

How Gluten Affects Digestion

1. In Kids With Celiac Disease

Celiac disease is an autoimmune condition where gluten triggers the immune system to attack the lining of the small intestine. This leads to damage that can cause:

  • Diarrhea or constipation

  • Bloating and gas

  • Stomach pain

  • Poor growth or weight loss

  • Nutrient deficiencies

Celiac disease affects about1 in 100 kids, and the only treatment is a strict gluten-free diet (1).

2. In Kids With Non-Celiac Gluten Sensitivity

Some kids test negative for celiac disease but still experience digestive discomfort when eating gluten. This is callednon-celiac gluten sensitivity and can cause:

  • Bloating

  • Gas

  • Stomach pain

  • Fatigue

  • Brain fog

The exact cause is not fully understood, but it may relate to how gluten interacts with gut bacteria or affects gut permeability in sensitive individuals (2).

3. In Kids Without Gluten Sensitivity

For kids without celiac disease or sensitivity, gluten itself typically does not cause digestive problems. In fact, whole grains that contain gluten (like whole wheat) provide fiber that supports digestion and gut health.

However, many processed foods made with gluten (white bread, crackers, snack foods) are low in fiber. This can contribute to constipation or poor gut motility—not because of the gluten itself but because of a lack of fiber (3).

Common Digestive Symptoms Sometimes Linked to Gluten

  • Gas

  • Bloating

  • Irregular pooping (either constipation or diarrhea)

  • Belly pain after meals

  • Fatigue, especially after eating gluten-heavy foods

Should You Remove Gluten?

  • If your kid has digestive issues, do not remove gluten before testing. Removing gluten before a celiac test can lead to inaccurate results.

  • If celiac disease is ruled out, a trial of reducing gluten may help determine if your kid feels better gluten-free.

  • Always consult a pediatrician or dietitian before starting a restrictive diet to ensure your child gets enough fiber, iron, B vitamins, and other key nutrients.

Gut-Friendly Tips Whether Gluten-Free or Not

  • Focus onwhole grains like oats, quinoa, brown rice, and millet if reducing gluten.

  • Boost fiber with fruits, veggies, beans, and prebiotics likeGrowing Up Prebiotics to support gut bacteria.

  • Hydrate well and encourage movement to support regular digestion.

Summary

Gluten impacts digestion differently for every kid. While it is harmless for most, kids with celiac disease or non-celiac gluten sensitivity may experience gas, bloating, constipation, or tummy aches when consuming gluten. If digestive issues show up regularly, testing for celiac disease and evaluating fiber intake are smart first steps before eliminating gluten completely.

View Citation

  1. Rubio-Tapia, A., et al. (2012). The prevalence of celiac disease in the United States. The American Journal of Gastroenterology, 107(10), 1538–1544. https://doi.org/10.1038/ajg.2012.219
  2. Catassi, C., et al. (2013). Non-Celiac Gluten Sensitivity: The New Frontier of Gluten Related Disorders. Nutrients, 5(10), 3839–3853. https://doi.org/10.3390/nu5103839
  3. Reicks, M., et al. (2014). Total dietary fiber intakes in the US population are critically low. J Acad Nutr Diet, 114(8), 1136–1141. https://doi.org/10.1016/j.jand.2014.05.003